STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phoDCa(2+)-dependent phospholipase D PhoD. (588 aa)    
Predicted Functional Partners:
phoA
Periplasmic alkaline phosphatase PhoA; Belongs to the alkaline phosphatase family.
  
 
 0.998
phoX
Monomeric alkaline phosphatase PhoX.
 
  
 0.975
phyS
Beta-propeller phytase PhyS.
 
   
 0.919
folE
GTP cyclohydrolase I FolE.
    
 0.915
folB
Dihydroneopterin aldolase FolB; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
 0.904
folX
D-erythro-78-dihydroneopterin triphosphate epimerase FolX.
     
 0.904
phoR
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR; Phosphate-responsive two component signal transduction system histidine kinase with PAS and DUF3329 domains PhoR.
      
 0.828
pstS-2
ABC-type phosphate uptake system substrate-binding component PstS.
   
  
 0.823
pstS
ABC-type phosphate uptake system substrate-binding component PstS.
   
  
 0.810
pitB
Metal ion-phosphate:proton symporter PitB.
   
  
 0.807
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.