STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoDCa(2+)-dependent phospholipase D PhoD. (588 aa)    
Predicted Functional Partners:
phoA
Periplasmic alkaline phosphatase PhoA; Belongs to the alkaline phosphatase family.
  
 
 0.995
phoX
Monomeric alkaline phosphatase PhoX.
 
  
 0.922
folE
GTP cyclohydrolase I FolE.
    
 0.920
folB
Dihydroneopterin aldolase FolB; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
 0.909
folX
D-erythro-78-dihydroneopterin triphosphate epimerase FolX.
     
 0.909
pstS-2
ABC-type phosphate uptake system substrate-binding component PstS.
   
  
 0.750
glnB
Regulatory protein for nitrogen assimilation by glutamine synthetase GlnB.
      
 0.718
pstS
ABC-type phosphate uptake system substrate-binding component PstS.
   
  
 0.623
pitB
Metal ion-phosphate:proton symporter PitB.
   
  
 0.585
exeS
Extracellular nuclease ExeS.
  
 0.583
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.