Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0816Protein of unknown function. (242 aa)    
Predicted Functional Partners:
mraZ
Protein MraZ; Belongs to the MraZ family.
   
  
 0.811
mloA
Fic family protein MloA; Adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins.
      
 0.803
sprT
Protein of unknown function DUF335 SprT; Belongs to the SprT family.
   
  
 0.800
SO_3346
Protein of unknown function DUF179; Belongs to the UPF0301 (AlgH) family.
      
 0.690
ycjX
Protein of unknown function DUF463 YcjX.
      
 0.667
SO_0587
Glycerophosphodiester phosphodiesterase.
      
 0.662
SO_4019
P-loop containing nucleoside triphosphate hydrolase superfamily.
      
 0.661
SO_2650
Uncharacterized protein.
   
  
 0.494
SO_1071
Membrane protein of unknown function UPF0016.
      
 0.493
SO_1371
RDD family protein.
      
 0.493
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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