Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
endAEndonuclease I EndA. (258 aa)    
Predicted Functional Partners:
rsmE
16S rRNA (uracil1498-N3)-methyltransferase RsmE; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
    
 0.965
sprT
Protein of unknown function DUF335 SprT; Belongs to the SprT family.
  
  
 0.953
exeM
Extracellular endonuclease ExeM.
     
 0.890
exeS
Extracellular nuclease ExeS.
     
 0.867
ompK
Nucleoside-specific outer membrane porin OmpK.
      
 0.806
nupC
Na-dependent nicotinamide ribose transporter NupC.
      
 0.804
phoU
Transcriptional regulator of high affinity phosphate uptake system PhoU; Plays a role in the regulation of phosphate uptake.
      
 0.802
deoD-3
Purine nucleoside phosphorylase DeoD.
   
  
 0.799
deoD
Purine nucleoside phosphorylase DeoD.
      
 0.794
deoD-2
Purine nucleoside phosphorylase DeoD.
      
 0.794
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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