STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
blaAClass D carbapenem-hydrolyzing beta-lactamase BlaA. (265 aa)    
Predicted Functional Partners:
ampC
Class C beta-lactamase AmpC.
     
 0.922
dacB
D-alanyl-D-alanine carboxypeptidase DacB.
      
 0.868
pbpG
D-alanyl-D-alanine endopeptidase PbpG; Belongs to the peptidase S11 family.
   
  
 0.865
SO_3054
Metallo-beta-lactamase family protein.
      
 0.823
SO_0914
Beta lactamase family protein.
     
 0.821
SO_3474
Metallo-beta-lactamase family protein.
   
  
 0.811
SO_0541
RNA-metabolizing metallo-beta-lactamase family protein.
      
 0.801
ampD
N-acetyl-anhydromuramyl-L-alanine amidase AmpD.
      
 0.788
mcrA
Penicillin-binding protein 1A McrA.
     
 0.736
sltY
Soluble lytic murein transglycosylase SltY.
      
 0.734
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.