Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0841Bifunctional periplasmic substrate binding protein/cytoplasmic diguanylate cyclase. (489 aa)    
Predicted Functional Partners:
SO_0181
Uncharacterized protein.
  
  
 0.959
SO_0400
Putative quinol monooxygenase.
   
  
 0.959
SO_3660
Sigma54-dependent transcriptional regulator with PAS sensory domain Fis family.
   
 
 0.958
SO_3662
Inner membrane 4Fe-4S ferredoxin.
      
 0.951
SO_0860
Two component signal transduction system response regulator with HD domain.
  
 0.945
SO_4003
Metal dependent phosphohydrolase with response regulator receiver modulation.
  
 0.926
SO_2539
Two component signal transduction system response regulator with cyclic diguanylate phosphodiesterase activity and PAS sensory domain.
  
 0.803
SO_1255
Bifunctional diguanylate cyclase/phosphodiesterase.
  
 0.796
SO_4145
Signalling protein with EAL and C2 domains.
  
 0.796
SO_4734
Bifunctional diguanylate cyclase/phosphodiesterase with PAS sensory domain.
 
 
 0.770
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.