Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0850Type IV pilin-associated adhesin. (542 aa)    
Predicted Functional Partners:
SO_0851
PilD processed protein.
  
  
 0.992
SO_0853
PilD processed protein.
  
  
 0.991
SO_0852
PilD processed protein.
  
  
 0.990
SO_0854
PilD processed protein.
  
  
 0.953
SO_1662
Protein of unknown function DUF583.
   
  
 0.942
pilT
Pilus retraction protein PilT.
     
 0.671
pilE
Type IV minor pilin protein PilE.
  
  
 0.561
SO_4556
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
   
    0.511
attFG
ABC-type export system permease component AttFG.
  
    0.432
attH
Hydroxyneurosporene synthase AttH.
  
    0.429
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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