STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0860Two component signal transduction system response regulator with HD domain. (338 aa)    
Predicted Functional Partners:
SO_0841
Bifunctional periplasmic substrate binding protein/cytoplasmic diguanylate cyclase.
  
 0.945
SO_3334
Diguanylate cyclase with HAMP domain.
  
 0.943
SO_0569
Diguanylate cyclase with PAS sensory domain.
 
 0.938
SO_4407
Diguanylate cyclase.
 
    0.938
SO_0928
Diguanylate cyclase.
 
    0.934
SO_2049
Diguanylate cyclase.
 
    0.934
SO_2174
Diguanylate cyclase with PAS sensory domain.
 
    0.934
SO_4457
Diguanylate cyclase.
 
    0.934
SO_1695
Diguanylate cyclase with PAS sensory domain.
 
    0.932
SO_3489
Diguanylate cyclase.
 
    0.931
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.