STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csgAMajor curlin subunit CsgA. (502 aa)    
Predicted Functional Partners:
csgG
Curli secretion apparatus outer membrane lipoprotein component CsgG.
 
  
 0.982
csgF
Curli secretion apparatus component CsgF.
 
  
 0.980
csgB
Minor curlin subunit CsgB.
 
  
0.922
csgE
Curli secretion apparatus substrate specificity factor CsgE.
  
  
 0.894
csgD
Transcriptional activator of curli operon CsgD.
   
  
 0.812
SO_0867
Collagenolytic serine protease; Belongs to the peptidase S8 family.
 
    0.775
gpN
Mu phage DNA circulation protein GpN.
  
    0.591
asnS
asparaginyl-tRNA synthetase AsnS.
      
 0.510
gmhB
DD-heptose 17-bisphosphate phosphatase GmhB.
   
  
 0.497
SO_1224
Esterase/lipase/thioesterase family protein.
  
     0.496
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.