STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
csgBMinor curlin subunit CsgB. (139 aa)    
Predicted Functional Partners:
csgF
Curli secretion apparatus component CsgF.
 
  
 0.969
csgG
Curli secretion apparatus outer membrane lipoprotein component CsgG.
 
  
 0.966
csgA
Major curlin subunit CsgA.
 
  
0.923
csgE
Curli secretion apparatus substrate specificity factor CsgE.
  
  
 0.840
aggA
Type I protein secretion system secretin component AggA.
      
 0.664
SO_0076
Outer membrane morn variant repeat-containing protein.
  
     0.633
csgD
Transcriptional activator of curli operon CsgD.
   
  
 0.601
SO_0867
Collagenolytic serine protease; Belongs to the peptidase S8 family.
 
    0.486
SO_4149
Secreted VCBS domain protein.
  
  
 0.482
sspB
Stringent starvation protein b SspB.
      
 0.468
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.