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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csgBMinor curlin subunit CsgB. (139 aa)    
Predicted Functional Partners:
csgF
Curli secretion apparatus component CsgF.
 
  
 0.964
csgG
Curli secretion apparatus outer membrane lipoprotein component CsgG.
 
  
 0.953
csgA
Major curlin subunit CsgA.
 
  
0.922
csgE
Curli secretion apparatus substrate specificity factor CsgE.
  
  
 0.771
aggA
Type I protein secretion system secretin component AggA.
      
 0.711
SO_0076
Outer membrane morn variant repeat-containing protein.
  
     0.633
htpX
Zn-dependent metalloprotease HtpX; Belongs to the peptidase M48B family.
      
 0.526
SO_0867
Collagenolytic serine protease; Belongs to the peptidase S8 family.
 
    0.496
SO_4149
Secreted VCBS domain protein.
  
  
 0.486
hflK
Membrane anchored FtsH modulator component 1 HflK; HflC and HflK could encode or regulate a protease.
      
 0.485
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.