STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0867Collagenolytic serine protease; Belongs to the peptidase S8 family. (835 aa)    
Predicted Functional Partners:
SO_1915
Extracellular serine protease subtilase family; Belongs to the peptidase S8 family.
  
  
 0.925
SO_0440
ImpA-like cell surface immunomodulating metalloprotease.
 
 
 0.829
csgA
Major curlin subunit CsgA.
 
    0.775
sapSH
Extracellular serine alkaline protease SapSH.
 
  
0.772
SO_4649
Histidine-rich protein of unknown function DUF3300.
  
 
 0.763
SO_4149
Secreted VCBS domain protein.
  
 
 0.760
SO_0189
Bifunctional autotransporter / adhesin cadherin family.
  
 
 0.758
SO_1949
Invasin domain protein.
  
 
 0.758
SO_4080
Outer membrane lipoprotein intimin-like protein.
  
 
 0.758
SO_1872
Surface lipoprotein with VCBS repeats.
  
 
 0.754
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.