STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0882Oxidoreductase GMC family. (533 aa)    
Predicted Functional Partners:
SO_1064
WD-40 repeat lipoprotein.
    
 0.833
SO_4675
Transcriptional regulator TetR family.
 
  
 0.785
gfaA
Glutathione-dependent formaldehyde-activating enzyme GfaA.
  
    0.753
SO_0055
Tetratricopeptide repeat-containing protein.
    
 0.666
batB
TPR domain protein in aerotolerance operon BatB.
    
 0.666
SO_0881
Predicted TAT leader-containing periplasmic protein.
       0.653
SO_2930
Bifunctional pectinolytic enzyme/cytochrome c.
 
 
   0.591
SO_2931
Cytochrome c lipoprotein.
 
 
   0.570
coxB
Aa3-type cytochrome c oxidase subunit II CoxB; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.563
SO_0908
Ankyrin domain protein.
    
 0.532
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.