Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_0886Putative metal-binding protein of unknown function DUF2387. (66 aa)    
Predicted Functional Partners:
SO_1648
Cold shock protein Csp family.
   
  
 0.819
cspD
DNA-binding cold shock protein CspD.
      
 0.750
cspA
Cold shock protein CspA.
   
  
 0.672
SO_2914
Protein of unknown function DUF412.
  
    0.654
hptA
Histidine-containing phosphotransfer domain protein HptA.
  
    0.650
rraB
Ribonuclease E inhibitor RraB; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome.
  
    0.638
yejL
Protein of unknown function DUF1414 YejL; Belongs to the UPF0352 family.
  
     0.602
SO_2422
Protein of unknown function DUF1315.
  
    0.599
yheS
REG family ATPase YheS.
  
    0.587
aguA
Agmatine deiminase AguA.
  
    0.583
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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