node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
dbpA | hrpA | SO_0897 | SO_2229 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | ATP-dependent helicase HrpA. | 0.717 |
dbpA | hrpB | SO_0897 | SO_0632 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | ATP-dependent helicase HrpB. | 0.572 |
dbpA | pnpA | SO_0897 | SO_1209 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | Polyribonucleotide nucleotidyltransferase PnpA; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.665 |
dbpA | rbgA | SO_0897 | SO_2590 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | 50s ribosomal subunit maturation GTPase RbgA; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.643 |
dbpA | rne | SO_0897 | SO_2785 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | Ribonuclease E Rne; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. | 0.806 |
dbpA | rnr | SO_0897 | SO_3935 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | 3'-5' exoribonuclease R Rnr; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.611 |
dbpA | rplA | SO_0897 | SO_0221 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | 50S ribosomal protein L1 RplA; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.565 |
dbpA | rplC | SO_0897 | SO_0231 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | 50S ribosomal protein L3 RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.615 |
dbpA | rpsD | SO_0897 | SO_0255 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | 30S ribosomal protein S4 RpsD; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.608 |
dbpA | yjeF | SO_0897 | SO_0598 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | Hydroxyethylthiazole kinase-related protein YjeF; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to [...] | 0.640 |
hrpA | dbpA | SO_2229 | SO_0897 | ATP-dependent helicase HrpA. | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | 0.717 |
hrpA | rnr | SO_2229 | SO_3935 | ATP-dependent helicase HrpA. | 3'-5' exoribonuclease R Rnr; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.484 |
hrpA | rpsD | SO_2229 | SO_0255 | ATP-dependent helicase HrpA. | 30S ribosomal protein S4 RpsD; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.840 |
hrpB | dbpA | SO_0632 | SO_0897 | ATP-dependent helicase HrpB. | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | 0.572 |
hrpB | rpsD | SO_0632 | SO_0255 | ATP-dependent helicase HrpB. | 30S ribosomal protein S4 RpsD; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.840 |
pnpA | dbpA | SO_1209 | SO_0897 | Polyribonucleotide nucleotidyltransferase PnpA; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | 0.665 |
pnpA | rbgA | SO_1209 | SO_2590 | Polyribonucleotide nucleotidyltransferase PnpA; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 50s ribosomal subunit maturation GTPase RbgA; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.497 |
pnpA | rne | SO_1209 | SO_2785 | Polyribonucleotide nucleotidyltransferase PnpA; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Ribonuclease E Rne; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. | 0.977 |
pnpA | rnr | SO_1209 | SO_3935 | Polyribonucleotide nucleotidyltransferase PnpA; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 3'-5' exoribonuclease R Rnr; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.852 |
pnpA | rplA | SO_1209 | SO_0221 | Polyribonucleotide nucleotidyltransferase PnpA; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 50S ribosomal protein L1 RplA; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.851 |