STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0916Bifunctional MarR family transcriptional regulator/acteyltransferase GNAT family. (309 aa)    
Predicted Functional Partners:
gltB
NADPH-dependent glutamate synthase large subunit GltB.
     
 0.645
pheA
Multifunctional chorismate mutase P/prephenate dehydratase/DAHP synthetase PheA.
  
  
 0.644
accADCB
acetyl-CoA carboxylase multifunctional enzyme AccADCB.
  
  
 0.633
SO_4002
Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
  
  
 0.607
barA
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with DUF2222 and Hpt domains BarA.
  
  
 0.568
SO_0915
Ankyrin domain protein.
 
     0.502
yjjX
Inosine/xanthosine triphosphatase YjjX; Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA/RNA precursor pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions.
       0.473
SO_2083
Chemotaxis signal transduction system methyl accepting sensory transducer.
   
    0.429
cyaC
Adenylate cyclase CyaC.
  
    0.418
SO_2251
Enzyme of unknown function UPF0227; Belongs to the UPF0227 family.
  
     0.411
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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