STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0943Signalling protein with PAS and GGDEF domains. (745 aa)    
Predicted Functional Partners:
glnK
Regulatory protein for nitrogen assimilation GlnK; Belongs to the P(II) protein family.
  
 
 0.570
glnB
Regulatory protein for nitrogen assimilation by glutamine synthetase GlnB.
  
 
 0.570
glnK-2
Regulatory protein for nitrogen assimilation GlnK; Belongs to the P(II) protein family.
  
 
 0.569
SO_0859
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
   
 
 0.549
SO_4002
Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
   
 
 0.517
SO_0944
Radical SAM protein TatD family-associated.
       0.466
prlS
Proline-responsive two component signal transduction system hybrid histidine kinase/resposne regulator PrlS.
   
 
 0.442
SO_2539
Two component signal transduction system response regulator with cyclic diguanylate phosphodiesterase activity and PAS sensory domain.
  
 
 0.436
glnG
DNA-binding transcriptional regulator NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.
  
 
 0.425
SO_3196
Two component signal transduction system response regulator.
  
 
 0.424
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.