STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0944Radical SAM protein TatD family-associated. (234 aa)    
Predicted Functional Partners:
ycfH
TatD family deoxyribonuclease YcfH.
      0.905
SO_1213
Hydrolase, TatD family.
      0.904
tatD
Deoxyribonuclease TatD.
      0.904
SO_0945
RND superfamily efflux pump permease component; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
    0.498
SO_0946
RND superfamily efflux pump MFP component; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.498
SO_4404
Iron-sulfur cluster-binding protein.
 
  
 0.488
SO_3449
WGR domain protein.
  
    0.483
pheT
phenylalanyl-tRNA synthetase beta subunit PheT; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.468
SO_0943
Signalling protein with PAS and GGDEF domains.
       0.466
SO_0728
Protein of unknown function COG1433.
  
  
 0.430
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.