Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
SO_0962Protein of unknown function DUF3332. (174 aa)    
Predicted Functional Partners:
SO_2008
Protein of unknown function DUF692; Belongs to the UPF0276 family.
   
    0.694
SO_0961
Small conductance mechanosensitive ion channel protein MscS family.
  
    0.492
SO_2710
DoxD-like inner membrane protein.
  
    0.446
SO_2064
Membrane-anchored YbdH domain protein.
   
    0.429
SO_0160
Aminobenzoyl-glutamate transporter AbgT family.
   
    0.413
rdoA
Serine/threonine protein kinase RdoA; A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response.
   
    0.404
SO_1387
HD domain protein.
   
    0.404
SO_3558
Predicted lipoprotein.
   
    0.404
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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