STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0975Disulphide interchange protein DsbD family. (474 aa)    
Predicted Functional Partners:
ccmC
ABC-type heme export system permease component 2 CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
  
  
 0.709
selR
methionine-R-sulfoxide reductase SelR; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.660
SO_0497
Serine/threonine protein kinase.
  
   
 0.644
SO_0404
Zinc dependent metalloprotease domain lipoprotein.
  
     0.625
SO_0551
Uncharacterized protein.
   
    0.583
mtrB
Extracellular iron oxide respiratory system outer membrane component MtrB.
  
     0.583
SO_0974
Putative cytoplasmic protein.
       0.529
SO_0719
TonB-dependent hemoprotein receptor.
  
     0.493
SO_0939
Split-soret diheme cytochrome c.
  
     0.491
hemL
Glutamate-1-semialdehyde-21-aminomutase HemL.
  
  
 0.453
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.