Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ohrRHydroperoxide resistance transcriptional regulator OhrR. (165 aa)    
Predicted Functional Partners:
ohrA
Peroxiredoxin OhrA.
  
 0.999
oxyR
Transcriptional regulator of oxidative stress OxyR; Belongs to the LysR transcriptional regulatory family.
      
 0.801
trxA
Thioredoxin 1 TrxA; Belongs to the thioredoxin family.
  
  
 0.679
glpD
Aerobic glycerol-3-phosphate dehydrogenase GlpD.
  
    0.584
ahpF
Alkyl hydroperoxide reductase flavoprotein component AhpF.
      
 0.576
SO_3349
Periplasmic glutathione peroxidase; Belongs to the glutathione peroxidase family.
 
  
 0.573
ahpC
Alkyl hydroperoxide reductase peroxiredoxin component AhpC; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
      
 0.536
katG-2
Bifunctional catalase/peroxidase HPI KatG; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
      
 0.536
trxC
Thioredoxin 2 TrxC; Belongs to the thioredoxin family.
  
  
 0.528
sodB
Fe/Mn superoxide dismutase SodB; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
      
 0.507
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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