Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pbpGD-alanyl-D-alanine endopeptidase PbpG; Belongs to the peptidase S11 family. (321 aa)    
Predicted Functional Partners:
dacB
D-alanyl-D-alanine carboxypeptidase DacB.
   
  
 0.972
blaA
Class D carbapenem-hydrolyzing beta-lactamase BlaA.
      
 0.813
mrdB
Rod shape-determining protein MrdB; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
   
 0.775
SO_0914
Beta lactamase family protein.
      
 0.679
SO_3054
Metallo-beta-lactamase family protein.
      
 0.667
SO_3474
Metallo-beta-lactamase family protein.
      
 0.667
SO_0541
RNA-metabolizing metallo-beta-lactamase family protein.
      
 0.662
SO_2607
Putative nucleoside transporter.
  
  
 0.659
mrdA
Penicillin-binding protein 2 MrdA; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
 
  
 0.604
hisS
histidyl-tRNA synthetase HisS.
   
  
 0.569
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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