STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
btuDABC-type cobalamin uptake system ATPase component BtuD. (314 aa)    
Predicted Functional Partners:
btuC
ABC-type cobalamin uptake system permease component BtuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.998
hmuC
ABC-type hemin uptake system permease component HmuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.990
btuF
ABC-type cobalamin uptake system substrate-binding component BtuF.
 
 
 0.978
msbA
ABC-type lipid A export system bifunctional ATPase and permease components MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
0.909
sapF
ABC-type peptide uptake system ATPase component 2 SapF.
 
    
0.907
sapD
ABC-type peptide uptake system ATPase component 1 SapD; Belongs to the ABC transporter superfamily.
 
    
0.906
pstB2
ABC-type phosphate uptake system permease ATPase component PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
    
0.900
SO_3692
ABC-type macrolide family export system ATPase component.
  
0.893
hmuB
ABC-type hemin uptake system substrate-binding component HmuB.
 
 
 0.838
cydC
ABC-type cysteine/glutathione export system bifunctional ATPase and permease component CydC.
 
   
0.778
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.