Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
artIABC-type arginine uptakesystem substrate-binding component ArtI; Belongs to the bacterial solute-binding protein 3 family. (244 aa)    
Predicted Functional Partners:
artQ
ABC-type arginine uptakesystem permease component ArtQ.
 0.999
artM
ABC-type arginine uptakesystem ATPase component ArtM.
 
 0.997
SO_3057
Phenylalanine/histidine ammonia-lyase family protein.
      
 0.970
carA
Carbamoyl-phosphate synthase small subunit CarA; Belongs to the CarA family.
   
  
 0.958
carB
Carbamoyl-phosphate synthase large subunit CarB; Belongs to the CarB family.
   
  
 0.842
argE
N-acetyl-L-ornithine deacetylase ArgE.
      
 0.802
argF
Ornithine carbamoyltransferase ArgF; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
  
  
 0.718
hutH
Histidine ammonia-lyase HutH; Belongs to the PAL/histidase family.
      
 0.665
SO_4646
Propeptide PepSY amd peptidase M4 domain protein.
   
   0.612
aroB
3-dehydroquinate synthase AroB; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.
      
 0.493
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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