STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1046Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family. (296 aa)    
Predicted Functional Partners:
lrgB
Inner membrane protein LrgB.
 
   
 0.944
lrgA
Inner membrane protein LrgA.
 
     0.856
SO_0295
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.775
SO_0989
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.767
SO_4524
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.761
SO_2561
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.756
lldR
Transcriptional regulator of L-lactate utilization LldR; Belongs to the LysR transcriptional regulatory family.
  
     0.744
hmgR
Homogentisate-responsive transcriptional repressor of homogenetisate degradation HmgR; Belongs to the LysR transcriptional regulatory family.
  
    0.726
SO_2847
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.723
exeM
Extracellular endonuclease ExeM.
      
 0.712
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.