Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrgAInner membrane protein LrgA. (144 aa)    
Predicted Functional Partners:
lrgB
Inner membrane protein LrgB.
 
  
 0.999
SO_1046
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.856
SO_0843
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.539
nosA
TonB-dependent copper receptor NosA.
  
     0.490
nosF
ABC-type copper transport system ATPase component NosF.
      
 0.469
ygiQ
Uncharacterized radical SAM protein YgiQ.
   
    0.421
SO_3342
Homotrimeric cation channel (TRIC) family protein.
   
  
 0.406
zapE
AFG1-like ATPase; Reduces the stability of FtsZ polymers in the presence of ATP.
   
    0.404
nosD
ABC-type copper transport system substrate-binding component NosD.
      
 0.400
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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