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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrgAInner membrane protein LrgA. (144 aa)    
Predicted Functional Partners:
lrgB
Inner membrane protein LrgB.
 
  
 0.999
SO_1046
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.856
SO_0843
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.539
nosA
TonB-dependent copper receptor NosA.
  
     0.490
dinB
DNA polymerase IV DinB; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
      
 0.487
nosF
ABC-type copper transport system ATPase component NosF.
      
 0.455
ygiQ
Uncharacterized radical SAM protein YgiQ.
   
    0.418
SO_3342
Homotrimeric cation channel (TRIC) family protein.
   
  
 0.403
zapE
AFG1-like ATPase; Reduces the stability of FtsZ polymers in the presence of ATP.
   
    0.400
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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