STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1061Lipoprotein with a tetratricopeptide repeat. (466 aa)    
Predicted Functional Partners:
SO_1060
TIGR02722 family lipoprotein.
 
  
 0.933
def-2
Peptide deformylase Def; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.773
lptA
ABC-type lipopolysaccharide export system chaperone component LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.
   
    0.608
slyX
Functionally uncharacterized protein SlyX; Belongs to the SlyX family.
       0.601
SO_1064
WD-40 repeat lipoprotein.
       0.601
SO_0835
Putative periplasmic peptidase C15 superfamily.
  
     0.542
SO_3331
Protein with CobQ/CobB/MinD/ParA nucleotide binding domain.
  
     0.446
SO_2808
Protein with CobQ/CobB/MinD/ParA nucleotide binding domain.
  
     0.422
fklB-2
Peptidyl-prolyl cis-trans isomerase FklB.
  
    0.421
SO_0497
Serine/threonine protein kinase.
  
     0.413
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.