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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slyXFunctionally uncharacterized protein SlyX; Belongs to the SlyX family. (70 aa)    
Predicted Functional Partners:
yejL
Protein of unknown function DUF1414 YejL; Belongs to the UPF0352 family.
  
  
 0.833
SO_1064
WD-40 repeat lipoprotein.
 
     0.826
yfiC
tRNA (adenine-N(6)-)-methyltransferase YfiC; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC).
  
   
 0.804
hptA
Histidine-containing phosphotransfer domain protein HptA.
  
     0.760
rraB
Ribonuclease E inhibitor RraB; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome.
  
    0.756
nhaB
Sodium:proton antiporter NhaB; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaB Na(+)/H(+) (TC 2.A.34) antiporter family.
  
   
 0.745
SO_2669
Mu phage protein of unknown function.
      
 0.732
SO_4134
Protein of unknown function DUF465.
      
 0.732
SO_4657
Diguanylate cyclase/phosphodiesterase with PAS and LOV sensory domains and Chase small molecule binding site.
      
 0.731
SO_2914
Protein of unknown function DUF412.
  
     0.728
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.