STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fklB-2Peptidyl-prolyl cis-trans isomerase FklB. (255 aa)    
Predicted Functional Partners:
apaH
Bis(5-nucleosyl)-tetraphosphatase ApaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
 
 0.721
htpG
Heat shock chaperone HtpG; Molecular chaperone. Has ATPase activity.
   
 0.667
lptB
ABC-type lipopolysaccharide export system ATPase component LptB.
   
  
 0.644
infA
Translation initiation factor IF-1 InfA; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
   0.608
SO_1064
WD-40 repeat lipoprotein.
  
   0.583
fkpB
Peptidyl-prolyl cis-trans isomerase FkpB.
   
  
 0.583
slyX
Functionally uncharacterized protein SlyX; Belongs to the SlyX family.
     
 0.546
ppiC-2
Peptidyl-prolyl cis-trans isomerase PpiC.
   
 
 0.529
ppiD
Peptidyl-prolyl cis-trans isomerse PpiD.
   
 
 0.528
ppiC
Peptidyl-prolyl cis-trans isomerase PpiC.
   
 
 0.525
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.