Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SO_1071Membrane protein of unknown function UPF0016. (184 aa)    
Predicted Functional Partners:
SO_1371
RDD family protein.
      
 0.826
SO_1916
DMSO-responsive transcriptional activator of efflux pump LysR family; Belongs to the LysR transcriptional regulatory family.
   
  
 0.826
SO_2650
Uncharacterized protein.
      
 0.826
SO_1333
4-toluene sulfonate uptake permease family protein.
      
 0.809
SO_3273
Motility accessory factor Maf family.
   
  
 0.805
deoD
Purine nucleoside phosphorylase DeoD.
   
    0.694
aguA
Agmatine deiminase AguA.
      
 0.669
flgO
Outer membrane lipoprotein required for flagellar motility FlgO.
      
 0.665
dhc
Diheme cytochrome c Dhc.
  
   
 0.539
SO_1450
Protein of unknown function DUF2787.
   
    0.511
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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