STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gbpAN-acetylglucosamine-binding protein A GbpA; Probably interacts with GlcNAc residues. May promote attachment to both epithelial cell surfaces and chitin. Belongs to the GbpA family. (491 aa)    
Predicted Functional Partners:
chiA
Chitinase ChiA.
 
  
0.900
pepN
Alanyl aminopeptidase PepN.
      
 0.805
prtV
Extracellular metalloprotease PrtV.
  
   
 0.746
hexB
beta-N-acetylhexosaminidase HexB.
  
   
 0.700
pnuR
Transcriptional activator of nicotinamideribose utilization PnuR.
  
     0.698
SO_0639
Collagenase.
  
  
 0.691
mdeA
Methionine gamma-lyase MdeA.
      
 0.662
O
Lambda phage replication protein O.
  
     0.575
deoT
Nucleoside sugar transporter DeoT.
  
    0.557
pnpA
Polyribonucleotide nucleotidyltransferase PnpA; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
      
 0.493
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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