Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SO_1074Tyrosine transporter TyrP-like protein. (395 aa)    
Predicted Functional Partners:
trpR
Transcriptional repressor of aromatic amino acid biosynthesis TrpR.
  
   
 0.627
SO_3047
Protein of unknown function DUF1097.
  
     0.605
sdaC
Serine uptake transporter SdaC.
  
    0.505
yecM
Protein of unknown function YecM.
  
     0.502
SO_1075
Dipeptydil peptidase S46 family; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
       0.435
kdkA
3-deoxy-D-manno-oct-2-ulosonic acid (KDO) kinase KdkA; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
    
 0.434
SO_0586
Membrane protein of unknown function DUF3392.
   
    0.429
argO
L-arginine efflux tranporter ArgO.
   
    0.413
SO_2407
Glycine radical enzyme YjjI family.
  
     0.401
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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