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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1100TRAP transporter substrate-binding component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (370 aa)    
Predicted Functional Partners:
dctM
TRAP-type C4-dicarboxylate:H+ symport system large permease component DctM.
  
  
 0.642
bolA
Global transcriptional regulator BolA; Belongs to the BolA/IbaG family.
  
    0.466
luxS
S-ribosylhomocysteinase LuxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family.
       0.465
dctP
TRAP-type C4-dicarboxylate:H+ symport system substrate-binding component DctP.
  
  
 0.457
ttpC
TonB2 energy transduction system inner membrane component TtpC.
  
    0.453
SO_1824
TonB2 energy transduction system periplasmic component.
  
    0.425
SO_2047
Prolyl oligopeptidase family S9 protein.
   
    0.418
pubA
Putrescine monooxygenase PubA.
   
    0.418
SO_2426
Two component signal transduction system response regulator.
   
    0.410
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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