Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ybaKaminoacyl-tRNA deacylase YbaK; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. (158 aa)    
Predicted Functional Partners:
SO_1123
Predicted inner membrane protein.
       0.515
SO_1125
10 TMS drug/metabolite efflux pump (DME) family.
       0.492
metG
methionyl-tRNA synthetase MetG; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
     
 0.458
gumN
Protein GumN.
     
 0.440
SO_3127
Multifunctional transcriptional regulator of DNA repair AraC family/ DNA glycosylase / 8-oxoguanine DNA glycosylase.
 
  
 0.436
glpD
Aerobic glycerol-3-phosphate dehydrogenase GlpD.
  
  
 0.408
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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