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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1148Endonuclease/exonuclease/phosphatase family protein. (377 aa)    
Predicted Functional Partners:
sufS
Cysteine desulfurase SufS; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
   
   0.826
kynU
Kynureninase KynU.
   
   0.825
SO_2448
MutT/nudix family protein; Belongs to the Nudix hydrolase family.
 
    0.729
SO_3060
Outer membrane porin.
  
    0.728
SO_1821
Outer membrane porin.
  
     0.721
SO_1482
TonB-dependent receptor.
  
    0.692
SO_0312
Outer membrane porin.
  
    0.680
SO_1991
Protein of unknown function DUF2570.
  
     0.647
SO_0835
Putative periplasmic peptidase C15 superfamily.
  
     0.623
SO_3811
Family 16 outer membrane lipoprotein of unknown function.
  
     0.618
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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