STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
holDDNA polymerase III psi subunit HolD. (116 aa)    
Predicted Functional Partners:
holC
DNA polymerase III chi subunit HolC.
   
 
 0.949
dnaX
DNA polymerase III gamma and tau subunits DnaX.
   
 
 0.948
holB
DNA polymerase III delta' subunit HolB.
    
 
 0.944
holA
DNA polymerase III delta subunit HolA.
    
 
 0.938
dnaE
DNA polymerase III alpha subunit DnaE.
    
 
 0.937
kdpD
Two component signal transduction system controlling the osmosenstive K+ channel histidine kinase KdpD.
      
 0.927
yrbG
Sodium:calcium antiporter CaCA family YrbG.
   
    0.793
rimI
Ribosomal-protein-alanine acetyltransferase RimI.
  
    0.641
SO_4527
10 TMS drug/metabolite efflux pump (DME) family.
   
    0.608
fklB-4
Peptidyl-prolyl cis-trans isomerase FklB.
   
    0.516
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.