Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ompKNucleoside-specific outer membrane porin OmpK. (283 aa)    
Predicted Functional Partners:
endA
Endonuclease I EndA.
      
 0.806
phoU
Transcriptional regulator of high affinity phosphate uptake system PhoU; Plays a role in the regulation of phosphate uptake.
      
 0.801
deoD
Purine nucleoside phosphorylase DeoD.
      
 0.798
deoD-2
Purine nucleoside phosphorylase DeoD.
      
 0.798
deoD-3
Purine nucleoside phosphorylase DeoD.
      
 0.798
ompW
Outer membrane protein OmpW.
      
 0.742
SO_1759
Branched-chain amino acid efflux pump permease component 2 AzlD family.
  
    0.688
nupC
Na-dependent nicotinamide ribose transporter NupC.
   
  
 0.671
SO_1821
Outer membrane porin.
   
  
 0.665
cpdB
Bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3`-nucleotidase CpdB; Belongs to the 5'-nucleotidase family.
   
  
 0.647
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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