STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1248Peptidase U32 family YhbV. (289 aa)    
Predicted Functional Partners:
SO_1249
Peptidase U32 family YhbU.
 
 0.992
SO_1250
SCP-2 sterol transfer family protein.
 
  
 0.965
yegQ
Peptidase U32 family YegQ.
 
 0.781
ydcP
Peptidase U32 family YdcP.
 
 
 0.722
nosD
ABC-type copper transport system substrate-binding component NosD.
  
    0.711
nnrS
Heme-copper-containing inner membrane protein NnrS.
 
    0.711
nosL
ABC-type copper uptake system periplasmic chaperone component NosL.
  
    0.696
nosY
ABC-type copper transport system permease component NosY.
  
    0.675
narQ
Nitrate/nitrite-responsive two component signal transduction system histidine kinase NarQ.
 
    0.618
cysG
uroporphyrin-III C-methyltransferase CysG; Belongs to the precorrin methyltransferase family.
  
    0.464
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.