STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1255Bifunctional diguanylate cyclase/phosphodiesterase. (509 aa)    
Predicted Functional Partners:
SO_3759
Diguanylate cyclase with GAF sensory domain.
  
 0.970
SO_2366
Two component signal transduction system response regulator with DUF3369 and HD domains.
  
 0.931
SO_1055
Diguanylate cyclase with PAS and GAF sensory domains.
 
0.926
SO_2174
Diguanylate cyclase with PAS sensory domain.
 
   0.924
SO_1646
Diguanylate cyclase.
 
    0.907
SO_2611
c-di-GMP-binding protein.
   
   0.898
barA
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with DUF2222 and Hpt domains BarA.
 
  
 0.888
SO_0859
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
 
 
 0.874
SO_0928
Diguanylate cyclase.
 
   0.859
SO_0569
Diguanylate cyclase with PAS sensory domain.
 
 0.852
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.