close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1260Extracellular solute-binding protein family 3. (273 aa)    
Predicted Functional Partners:
SO_3501
Protein of unknown function DUF861.
  
    0.834
SO_1143
Periplasmic substrate binding protein family 3.
  
    0.781
SO_1503
Periplasmic substrate binding protein family 3.
  
    0.776
SO_3481
Periplasmic substrate binding protein family 3.
  
    0.776
SO_3860
Periplasmic substrate binding protein family 3.
  
    0.772
SO_3412
Periplasmic solute binding protein.
  
    0.711
SO_0736
Predicted periplasmic protein.
  
    0.702
SO_4714
ABC-type amino acid uptake system substrate-binding component PAAT family.
  
    0.700
SO_2366
Two component signal transduction system response regulator with DUF3369 and HD domains.
  
    0.565
SO_3894
Two component signal transduction system histidine kinase.
  
    0.565
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.