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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
puuDGamma-glutamyl-aminobutyrate hydrolase PuuD. (253 aa)    
Predicted Functional Partners:
puuA
Gamma-glutamyl-putrescine synthase PuuA; Belongs to the glutamine synthetase family.
 
  
 0.946
SO_1264
FAD-dependent oxidoreductase.
 
  
 0.824
puuB
Gamma-glutamylputrescine oxidoreductase PuuB.
 
  
 0.768
SO_2052
FAD-dependent oxidoreductase.
 
  
 0.767
puuR
Putrescine degradation gene regulator PuuR.
 
  
 0.683
SO_3678
FAD-dependent oxidoreductase.
 
  
 0.637
glnA
Glutamine synthetase GlnA.
  
  
 0.546
puuC
Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC; Belongs to the aldehyde dehydrogenase family.
 
 
 0.537
tnpA-27
ISSod4 transposase TnpA_ISSod4.
       0.510
SO_3791
Periplasmic Zn-dependent dipeptidase M19 family.
     0.469
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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