STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
potGABC-type putrescine uptake system ATPase component PotG; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (378 aa)    
Predicted Functional Partners:
potH
ABC-type putrescine uptake system permease component 1 PotH.
 0.999
potI
ABC-type putrescine uptake system permease component 2 PotI.
 0.999
potF
ABC-type putrescine uptake system substrate-binding component PotF; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 0.997
SO_1707
ABC-type drugE1 family efflux system permease component.
 
      0.877
sapC
ABC-type peptide uptake system permease component 2 SapC.
 
      0.875
hsdM
Type I restriction-modification system N6-adenine DNA methyltransferase HsdM.
      
 0.868
cydC
ABC-type cysteine/glutathione export system bifunctional ATPase and permease component CydC.
 
     
0.851
modB
ABC-type molybdate uptake system permease component ModB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
    
 0.813
potE
Putrescine:ornithine antiporter PotE; Catalyzes both the uptake and excretion of putrescine. The uptake of putrescine is dependent on the membrane potential and the excretion involves putrescine-ornithine antiporter activity. Belongs to the amino acid-polyamine-organocation (APC) superfamily. Basic amino acid/polyamine antiporter (APA) (TC 2.A.3.2) family.
      
 0.802
hsdM-2
Type I restriction-modification system N6-adenine DNA methyltransferase HsdM.
      
 0.802
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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