Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpsU30S ribosomal protein S21 RpsU; Belongs to the bacterial ribosomal protein bS21 family. (71 aa)    
Predicted Functional Partners:
rpmF
50S ribosomal protein L32 RpmF; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.997
rplU
50S ribosomal protein L21 RplU; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.996
rpmB
50S ribosomal protein L28 RpmB; Belongs to the bacterial ribosomal protein bL28 family.
   
 
 0.996
rpmH
50S ribosomal protein L34 RpmH; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.995
rpsT
30S ribosomal protein S20 RpsT; Binds directly to 16S ribosomal RNA.
  
 
 0.995
rpsP
30S ribosomal protein S16 RpsP; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.993
rplS
50S ribosomal protein L19 RplS; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.993
rpsB
30S ribosomal protein S2 RpsB; Belongs to the universal ribosomal protein uS2 family.
  
 
 0.993
rplY
50S ribosomal protein L25 RplY; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family.
  
 
 0.993
rplM
50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
 
 0.993
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.