Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_1306Protein of unknown function DUF2750. (126 aa)    
Predicted Functional Partners:
SO_1305
Membrane protein.
  
    0.741
SO_3280
Protein of unknown function DUF465.
  
     0.641
SO_2181
Uncharacterized protein.
  
     0.511
tusB
tRNA 2-thiouridine synthesizing protein B subunit TusB.
   
    0.511
flgT
Flagella assembly protein FlgT.
  
     0.474
aqpZ
Aquaporin Z AqpZ; Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity; Belongs to the MIP/aquaporin (TC 1.A.8) family.
       0.468
SO_3124
Dual specificity protein-tyrosine phosphatase.
   
    0.442
SO_0308
Inner membrane protein of unknown function DUF1212.
  
     0.428
SO_2839
Protein of unknown function DUF3010.
  
    0.415
chrR
anti-ECFsigma factor ChrR.
  
     0.406
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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