Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SO_1311Transmembrane transcriptional regulator. (715 aa)    
Predicted Functional Partners:
SO_3545
Outer membrane porin; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
 
 
 0.695
mtrB
Extracellular iron oxide respiratory system outer membrane component MtrB.
  
 
   0.522
pal
Peptidoglycan-associated lipoprotein Pal; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.510
rlpA
Septal ring lipoprotein RlpA; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
 
 0.470
tolA
TolA energy-transducing system inner membrane component TolA.
  
 
 0.446
rpoA
DNA-directed RNA polymerase alpha subunit RpoA; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.443
SO_4811
Periplasmic peptidase family M16B.
  
    0.439
SO_4321
Pal-like T1SS-linked outer membrane lipoprotein.
 
 
 0.424
SO_4528
Predicted periplasmic protein.
   
    0.421
SO_1310
Serine peptidase S9 family.
  
    0.415
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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