STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1371RDD family protein. (169 aa)    
Predicted Functional Partners:
SO_1071
Membrane protein of unknown function UPF0016.
      
 0.808
SO_1916
DMSO-responsive transcriptional activator of efflux pump LysR family; Belongs to the LysR transcriptional regulatory family.
      
 0.808
SO_2650
Uncharacterized protein.
      
 0.808
SO_1333
4-toluene sulfonate uptake permease family protein.
     
 0.804
SO_3273
Motility accessory factor Maf family.
   
  
 0.786
petC
Ubiquinol-cytochrome c reductase cytochrome c1 subunit PetC.
  
     0.753
aguA
Agmatine deiminase AguA.
   
  
 0.733
flgO
Outer membrane lipoprotein required for flagellar motility FlgO.
      
 0.711
petA
Ubiquinol-cytochrome c reductase FeS subunit PetA; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
     0.695
cytcB
Diheme cytochrome c4 CytcB.
  
     0.685
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.