STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1376Integral membrane protein of unknown function DUF1449. (211 aa)    
Predicted Functional Partners:
SO_1377
Putative negative regulator of univalent cation permeability.
 
  
 0.955
SO_1378
Peptidase family 56.
  
  
 0.936
SO_1375
Thermostable carboxypeptidase 1; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.
  
  
 0.925
tonB-2
TonB mediated energy transduction system energy transducer component TonB.
   
    0.701
putB
Ferric putrebactin reductase PutB.
   
  
 0.690
SO_4130
Putative membrane protein Nfed superfamily.
  
  
 0.673
SO_3762
Membrane protein of unknown function DUF350.
  
    0.574
SO_3765
PspA/IM30 family protein.
 
  
 0.557
SO_1117
Cytoplasmic leucyl metal-dependent aminopeptidase.
    
 
 0.535
hflK
Membrane anchored FtsH modulator component 1 HflK; HflC and HflK could encode or regulate a protease.
   
 
 0.506
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.