Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_1376Integral membrane protein of unknown function DUF1449. (211 aa)    
Predicted Functional Partners:
SO_1377
Putative negative regulator of univalent cation permeability.
 
  
 0.991
SO_1378
Peptidase family 56.
  
  
 0.960
SO_1375
Thermostable carboxypeptidase 1; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.
     
 0.939
tonB-2
TonB mediated energy transduction system energy transducer component TonB.
   
    0.694
putB
Ferric putrebactin reductase PutB.
   
  
 0.666
SO_4130
Putative membrane protein Nfed superfamily.
  
  
 0.635
SO_3762
Membrane protein of unknown function DUF350.
  
    0.573
SO_3765
PspA/IM30 family protein.
 
  
 0.540
SO_2407
Glycine radical enzyme YjjI family.
      
 0.478
SO_1117
Cytoplasmic leucyl metal-dependent aminopeptidase.
    
 
 0.476
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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