Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_1411Predicted outer membrane protein. (360 aa)    
Predicted Functional Partners:
SO_3513
Flavin-dependent tryptophan halogenase.
  
    0.815
SO_1412
Outer membrane beta barrel protein.
 
    0.595
SO_2583
Methyltransferase.
  
     0.507
SO_2427
ArgR-regulated TonB-dependent receptor.
  
     0.482
prlS
Proline-responsive two component signal transduction system hybrid histidine kinase/resposne regulator PrlS.
 
    0.481
torF
TMAO reductase system outer membrane porin TorF.
  
    0.464
SO_1410
Periplasmic RmlC-type Cupin domain family protein.
       0.463
SO_1413
Flavocytochrome c heme submit.
  
    0.459
SO_0757
TPR domain lipoprotein.
  
    0.446
SO_1414
Flavocytochrome c flavin subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
    0.446
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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