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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1415Transcriptional repressor of flavocytochrome c TetR family. (260 aa)    
Predicted Functional Partners:
SO_3297
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
    
 
 0.731
SO_3890
Energy taxis-modulating methyl accepting sensory transducer with hemerythrin sensory domain.
    
 
 0.594
SO_3642
Energy taxis modulating methyl accepting sensory transducer.
    
 
 0.592
SO_4454
Energy taxis-modulating methyl-accepting chemotaxis protein with Cache_1 sensory domain.
    
 
 0.592
ttrS
Thiosulfate/tetrathionate-responsive two component signal transduction system histidine kinase TtrS.
   
 
 0.587
SO_2039
Signalling protein with EAL domain.
      
 0.567
ttrR
Two-component system, LuxR family, response regulator TtrR; Thiosulfate/tetrathionate-responsive two component signal transduction system response regulator TtrR.
   
  
 0.555
SO_4718
Tungstate-responsive two component Sigma54-dependent signal transduction system response regulator Fis family.
   
  
 0.555
SO_0490
Transmembrane transcriptional regulator CadC family.
   
  
 0.536
SO_3282
Energy taxis modulating methyl accepting sensory transducer.
   
 
 0.532
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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