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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1416Two component signal transduction system response regulator LuxR family. (199 aa)    
Predicted Functional Partners:
SO_1417
Two component signal transduction system histidine kinase.
 
 0.964
cheR-3
Chemotaxis signal transduction system MCP methyltransferase CheR.
      0.857
ttrS
Thiosulfate/tetrathionate-responsive two component signal transduction system histidine kinase TtrS.
 
 0.852
SO_0859
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
 
 
 
 0.688
prlS
Proline-responsive two component signal transduction system hybrid histidine kinase/resposne regulator PrlS.
  
 
 0.669
SO_4002
Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
 
 
 
 0.651
torS
Histidine kinase; TMAO-responsive two component signal transduction system hybrid histidine kinase/response regulator TorS.
 
 
 
 0.636
barA
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with DUF2222 and Hpt domains BarA.
   
 
 0.595
cheR
Chemotaxis signal transduction system MCP methyltransferase CheR; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
 
    0.535
rcsB
Two-component system, NarL family, captular synthesis response regulator RcsB; Two component signal transduction system response regulator of capsule flagella and curli biosynthesis RcsB.
  
   
 0.523
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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