Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SO_1420Metal-induced outer membrane porin IfcO family. (345 aa)    
Predicted Functional Partners:
SO_2076
Uncharacterized protein.
   
    0.868
SO_1419
Predicted FMN-binding domain-containing lipoprotein.
  
    0.736
mlaA
Phospholipid transport-associated protein MlaA.
   
 
 0.697
SO_3905
Predicted outer membrane protein.
  
 
   0.632
ykoF
Thiamin/hydroxymethyl pyrimidine-binding protein YkoF.
  
     0.610
SO_3545
Outer membrane porin; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
   
 0.604
SO_2715
Thiamine-regulated TonB-dependent receptor.
  
  
 0.598
SO_0835
Putative periplasmic peptidase C15 superfamily.
  
     0.583
SO_0497
Serine/threonine protein kinase.
  
    0.572
SO_0312
Outer membrane porin.
  
 
  0.558
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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