Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dmsEPeriplasmic decaheme cytochrome c DmsE. (318 aa)    
Predicted Functional Partners:
dmsF
Extracellular dimethyl sulfoxide/manganese oxide reductase outer membrane translocase DmsF.
  
  
 0.965
mtrB
Extracellular iron oxide respiratory system outer membrane component MtrB.
 
  
 0.957
dmsB
Extracellular dimethyl sulfoxide/manganese oxide reductase ferredoxin subunit DmsB.
  
  
 0.936
nrfA
Ammonia-forming nitrite reductase NrfA; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process. Has very low activity toward hydroxylamine. Has even lower activity toward sulfite. Sulfite reductase activity is maximal at neutral pH (By similarity); Belongs to the cytochrome c-552 family.
  
 
 0.866
napB
Periplasmic nitrate reductase cytochrome c subunit NapB; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from the membrane-anchored tetraheme c-type CymA protein and transfers these to NapA subunit, thus allowing electron flow between membrane and periplasm. Not essential for nitrate reduction but confers advantage to the organism when grown on nitrate and thereby a fitness gain in utilizing nitrate. Belongs to the NapB family.
  
  
 0.861
dmsA
Extracellular dimethyl sulfoxide/manganese oxide reductase molybdopterin-binding subunit DmsA; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.861
omcA
Extracelllular iron oxide respiratory system surface decaheme cytochrome c component OmcA.
  
 
 0.853
mtrF
Extracellular respiratory system surface decaheme cytochrome c component MtrF.
  
 
 0.853
cymA
Membrane anchored tetraheme cytochrome c CymA.
 
  
 0.840
cctA
Periplasmic tetraheme cytochrome c CctA.
      
 0.803
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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